Teaching
TU Dresden, latest
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Lake ecology field course (Master Hydrobiology, MHB01, 2025)
Schedule
Introduction
Experiments
Presentations guide
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System analysis (Master Hydrobiology, MHB03a, 2024/25)
Introduction to system analysis
Quick start with R
The continuous flow stirred tank reactor
Residence times
First order processes
Simultaneous ODE
Limitation and inhibition
Efficient ODE-based models, Bioreactor example
Penguine in the cold
Intro to further examples and state spaces
Bioreactor model (xlsx workbook)
Understanding competition and coexistence
Basic algae competition model (xlsx workbook)
Online demo (link to R/shiny app)
Advanced algae competition (bi-stability and hysteresis)
Advanced algae competition model (xlsx workbook)
Predation
Predation model (xlsx workbook)
Inverse modeling
Growth curve data (r code / plain text)
Stochasticity and agent-based simulation
(preliminary)
Fish population model (zip archive)
TU Dresden, legacy material
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16S rRNA amplicon sequence analysis (Master Hydrobiology, MHyb02; Bachelor MBBT, 2023)
Course material (.zip archive)
! about 130 MB
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Loads, balances, and the CFSTR (Master Hydrobiology, MHyb11, 2022)
Presentation (.pdf)
Data (.zip archive)
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Data management (Master Hydrobiology, MHyb11, 2020 and 2022)
Short version (recommended)
Presentation (.pdf)
Data (.zip archive)
Long version (to be updated)
Presentation (.pdf)
Data (.zip archive)
Uni Potsdam (in German, not updated)
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Introduction to water quality modeling (in German, Uni Potsdam, 2014)
Presentation (.pdf)
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Ordinary differential equations (in German, Uni Potsdam, 2014)
Presentation (.pdf)
Workshops
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Hacking limnology 2024 workshop
Intro to ODE-based modeling
Hands-on part (R/rodeo)
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Crash course in R (ANSWER ITN, Dresden, 2016);
not up-to-date
Presentation with examples (.pdf)