David Kneis (Geo-ecologist, Dr.)

This page extends my official home page at TU Dresden Institute of Hydrobiology.

Contact

Email	firstname.lastname@tu-dresden.de
Phone	+49 351 463 32 32 9
Visiting address	01062 Dresden, Zellescher Weg 40 ("Drudebau"), Room 31 (1st floor)

Research and publications

I'm working at the interface of hydrology, ecology, and microbiology. My focus is on process-based modeling and data analysis but I like field work and experiments as well. My research topics include:

• Prevalence and spread of antibiotic resistance in the environment
• Lake and river water quality modeling
• Hydrological catchment modeling

A recent list of publications can be found on this google scholar page or this ORCID page.

Teaching

Hacking limnology 2024 workshop Close Open

• Intro to ODE-based modeling
• Hands-on part (R/rodeo)

System analysis (Master Hydrobiology, MHB03a, 2024/25) Close Open

• Introduction to system analysis
• Quick start with R
• The continuous flow stirred tank reactor
• Residence times
• First order processes
• Simultaneous ODE
• Limitation and inhibition
• Efficient ODE-based models, Bioreactor example
• Penguine in the cold

Aquatic ecology (Bachelor MBBT, 2024) Close Open

• Daten des Kursteils Seen
• Hinweise Präsentationen

Lake ecology field course (Master Hydrobiology, MHB01, 2024) Close Open

• Program and topics
• Access to data
• Presentations guide (DE)

16S rRNA amplicon sequence analysis (Master Hydrobiology, MHyb02; Bachelor MBBT, 2023) Close Open

• Course material (.zip archive) ! about 130 MB

Loads, balances, and the CFSTR (Master Hydrobiology, MHyb11, 2022) Close Open

• Presentation (.pdf)
• Data (.zip archive)

Data management (Master Hydrobiology, MHyb11, 2020 and 2022) Close Open

Short version (recommended)

• Presentation (.pdf)
• Data (.zip archive)

Long version (to be updated)

• Presentation (.pdf)
• Data (.zip archive)

Crash course in R (ANSWER ITN, Dresden, 2016); not up-to-date Close Open

• Presentation with examples (.pdf)

Introduction to water quality modeling (in German, Uni Potsdam, 2014) Close Open

• Presentation (.pdf)

Ordinary differential equations (in German, Uni Potsdam, 2014) Close Open

• Presentation (.pdf)

Software

R-package rodeo	Facilitates the implementation of models built on ODE and 1-dimensional PDE
R-package tabular	SQL-like constrainst for poor man's data bases
ECHSE framework	C++ based framework for (eco)-hydrological modeling

You can find examples of current eco-hydrological models on this website maintained together with my colleage Thomas Petzoldt.

CV

since 2014	Scientist at the Institute of Hydrobiology, TU Dresden, Germany
2016-2020	Scientist at the Environmental Research Center - UFZ, Dept. of River Ecology, Magdeburg, Germany (Group of Markus Weitere)
2010-2014	Scientist at the Institute of Earth and Environmental Sciences, University of Potsdam, Germany
2012/2013	Visiting scientist at the Indian Institute of Technology, Kharagpur, West Bengal, India (Group of R. Singh)
2007-2010	Visiting scientist at the flood forecasting center of Saxony (Dresden, Germany)
2007	PhD in Geoecology (download thesis)
2002-2006	PhD Student, University of Potsdam (Group of Axel Bronstert)
1997-2002	Studies of Geoecology, University of Potsdam, Germany